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@@ -0,0 +1,425 @@
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+package com.qizhen.healsphere;
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+
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+import com.alibaba.fastjson.JSONArray;
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+import com.alibaba.fastjson.JSONObject;
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+import com.qizhen.healsphere.common.ai.BaidubceUtil;
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+import com.qizhen.healsphere.common.ai.Knowlege;
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+import com.qizhen.healsphere.common.ai.QizhenAssistant;
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+import com.qizhen.healsphere.repository.neo4j.entity.BaseEntity;
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+import com.qizhen.healsphere.service.EntityService;
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+import com.qizhen.healsphere.service.RelationshipService;
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+import com.qizhen.healsphere.web.vo.CreateEntityVO;
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+import com.qizhen.healsphere.web.vo.RelationshipVO;
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+import org.apache.commons.collections4.MapUtils;
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+import org.apache.commons.lang3.StringUtils;
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+import org.apache.poi.hssf.usermodel.HSSFRow;
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+import org.apache.poi.hssf.usermodel.HSSFSheet;
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+import org.apache.poi.hssf.usermodel.HSSFWorkbook;
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+import org.junit.Test;
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+import org.junit.runner.RunWith;
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+import org.springframework.beans.factory.annotation.Autowired;
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+import org.springframework.boot.test.context.SpringBootTest;
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+import org.springframework.context.annotation.ComponentScan;
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+import org.springframework.test.context.junit4.SpringRunner;
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+import org.springframework.util.CollectionUtils;
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+
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+import java.io.File;
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+import java.io.FileOutputStream;
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+import java.io.IOException;
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+import java.util.ArrayList;
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+import java.util.List;
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+import java.util.Map;
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+import java.util.Objects;
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+
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+@RunWith(SpringRunner.class)
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+@ComponentScan(basePackages = {"com.qizhen.healsphere.model","com.qizhen.healsphere.repository"})
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+@SpringBootTest
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+public class DataWriteTest {
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+ @Autowired
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+ RelationshipService relationshipService;
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+ @Autowired
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+ EntityService entityService;
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+
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+ @Test
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+ public void writeNeo4j() {
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+ String startLabel = "疾病";
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+ String propertyStr = "并发症\t的并发症有哪些疾病";
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+ String[] properties = propertyStr.split(",");
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+ for(String property:properties){
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+ String[] split = property.split("\t");
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+ if(split.length<2){
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+ continue;
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+ }
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+ String endLabel = split[0];
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+ List<Knowlege> data = getData(BaidubceUtil.getAccessToken(), property);
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+ if(!CollectionUtils.isEmpty(data)) {
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+ long startId = -1;
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+ for (Knowlege temp:data) {
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+ String value = temp.getValue();
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+ if(StringUtils.isBlank(value)){
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+ continue;
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+ }
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+ try{
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+ JSONArray jsonArray = JSONArray.parseArray(value);
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+ BaseEntity fromEntity = createNoExists(startLabel, temp.getEntity());
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+ startId = fromEntity.getId();
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+ List<RelationshipVO> relationshipList = new ArrayList<>();
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+ for(int i=0;i<jsonArray.size();i++){
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+ String name = jsonArray.getString(i);
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+ if(StringUtils.isEmpty(name)){
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+ continue;
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+ }
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+ BaseEntity toEntity = createNoExists(endLabel, name);
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+ Long endId = toEntity.getId();
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+ RelationshipVO relationshipVO = new RelationshipVO();
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+ relationshipVO.setStartId(startId);
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+ relationshipVO.setEndId(endId);
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+ relationshipVO.setStartLabel(startLabel);
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+ relationshipVO.setEndLabel(endLabel);
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+ relationshipVO.setRelationshipType(startLabel+"相关"+endLabel);
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+ relationshipList.add(relationshipVO);
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+ }
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+ if(!CollectionUtils.isEmpty(relationshipList)) {
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+ relationshipService.createRelationship(relationshipList);
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+ }
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+ }catch (Exception e){
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+ e.printStackTrace();
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+ }
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+ }
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+ }
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+ }
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+ }
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+
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+ private BaseEntity createNoExists(String labelName, String name) {
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+ BaseEntity nodeByName = entityService.findNodeByName(labelName, name);
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+ if(Objects.nonNull(nodeByName)){//节点不存在
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+ return nodeByName;
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+ }
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+ CreateEntityVO createEntity = new CreateEntityVO();
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+ createEntity.setName(name);
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+ createEntity.setLabel(labelName);
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+ return entityService.create(createEntity);
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+ }
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+
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+ public void main() {
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+ String accessToken = BaidubceUtil.getAccessToken();
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+ String propertyStr = "并发症\t的并发症有哪些疾病"+
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+ ",常见并发症\t的常见并发症有哪些疾病" +
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+ ",提示病情加重或进展的临床指标\t的诊疗过程或病程中出现哪些指标或情况，可能提示疾病进一步进展、加重或恶化。" +
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+ ",早期预警指标\t的早期临床预警指标有哪些" +
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+ ",病因\t的病因或常见病因有哪些病因或致病原因" +
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+ ",危险因素\t的危险因素或常见危险因素或危险诱发因素有哪些" +
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+ ",遗传方式\t的遗传方式有哪些遗传方式（如果该病无遗传方式，可回答“无”）" +
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+ ",遗传基因\t的遗传基因名称有哪些遗传基因名称" +
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+ ",诱因\t的诱因或诱发因素或常见诱因有哪些诱因" +
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+ ",出院标准\t的出院标准有哪些"+
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+ ",合并症\t可能合并的疾病有哪些疾病" +
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+ ",常合并的疾病\t常见的可能合并的疾病有哪些疾病" +
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+ ",护理操作\t相关的护理操作有哪些护理操作名称" +
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+ ",护理方案\t是一种疾病，请为该病做一个简要的护理方案" +
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+ ",护理方式\t可能用到的护理方式或护理方法有哪些" +
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+ ",分期\t的分期有哪些" +
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+ ",分型\t的分型有哪些" +
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+ ",分型分期标准\t的分型分期标准有哪些" +
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+ ",父类\t的父类疾病名称或更大类的疾病名称有哪些疾病名称" +
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+ ",严重程度\t按疾病严重程度分类有哪些" +
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+ ",子类\t常见的子类疾病或疾病分类分型有哪些疾病" +
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+ ",病原学检查\t的病原学检查项目名称有哪些" +
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+ ",辅助检查\t的辅助检查项目名称有哪些" +
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+ ",实验室检查\t的实验室检查项目名称或化验项目名称或检验项目名称有哪些" +
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+ ",随访复查\t随访时需要复查的检查项目名称有哪些" +
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+ ",体格检查\t的体格检查项目名称或体查项目名称有哪些" +
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+ ",主要体格检查项目\t的主要体格检查项目名称或体查项目名称有哪些" +
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+ ",相关B超检查\t相关的B超检查项目名称或超声检查项目名称或彩超检查项目名称有哪些" +
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+ ",相关电学检查\t相关的心电图、脑电或肌电检查项目名称有哪些" +
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+ ",相关检查\t相关的检查项目名称有哪些" +
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+ ",关尿液检查\t相关的尿液检查项目名称或尿检名称有哪些" +
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+ ",关血液检查\t相关的血液检查项目名称或血清学检查项目名称有哪些" +
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+ ",血清学检查\t的血清学检查项目名称有哪些" +
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+ ",相关影像学检查\t相关的影像学检查名称有哪些" +
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+ ",诊断相关检查\t诊断相关的检查项目名称或诊断时需要的检查项目名称有哪些" +
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+ ",治疗相关检查\t治疗相关检查项目名称或用于指导治疗的检查项目名称有哪些" +
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+ ",与…鉴别诊断\t需要鉴别诊断的疾病名称有哪些疾病名称" +
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+ ",就诊科室\t的就诊科室有哪些科室名称" +
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+ ",最常见的就诊科室\t最常见的就诊科室有哪些科室名称" +
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+ ",所属科室\t所属的科室有哪些科室名称" +
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+ ",临床表现\t的临床表现有哪些临床表现" +
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+ ",症状\t的症状有哪些症状" +
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+ ",常见症状\t的常见症状有哪些症状" +
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+ ",典型症状\t的典型症状有哪些症状" +
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+ ",前驱症状\t的前驱症状或先兆症状有哪些症状" +
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+ ",主要症状\t的主要症状有哪些症状";
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+
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+ saveExel(propertyStr, accessToken,"前半生");
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+ }
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+
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+ static HSSFWorkbook workbook;
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+
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+ private static void saveExel(String propertyStr, String accessToken,String fileName) {
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+ String[] properties = propertyStr.split(",");
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+ workbook = new HSSFWorkbook();//这里也可以设置sheet的Name
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+ HSSFSheet sheet = workbook.createSheet(fileName);
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+ ;//工作表
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+ int rows = 0;
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+ for(String property:properties){
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+ List<Knowlege> data = getData(accessToken, property);
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+ if(!CollectionUtils.isEmpty(data)) {
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+ for (Knowlege temp:data) {
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+ HSSFRow row = sheet.createRow(rows++);
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+ row.createCell(0).setCellValue(temp.getEntity() == null ? "" : temp.getEntity());
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+ row.createCell(1).setCellValue(temp.getProperty() == null ? "" : temp.getProperty());
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+ row.createCell(2).setCellValue(temp.getValue() == null ? "" : temp.getValue());
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+ row.createCell(3).setCellValue(temp.getQuestion() == null ? "" : temp.getQuestion());
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+ row.createCell(4).setCellValue(temp.getAnswer() == null ? "" : temp.getAnswer());
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+ row.createCell(5).setCellValue(temp.getChunk() == null ? "" : temp.getChunk());
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+ row.createCell(6).setCellValue(temp.getRefenrece() == null ? "" : temp.getRefenrece());
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+ }
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+ }
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+ save(fileName);
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+ }
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+ }
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+
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+ private static synchronized void save(String fileName) {
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+ try {
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+ fileName="C:\\Users\\17664\\Desktop\\"+fileName+System.currentTimeMillis()+".xlsx";
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+ //文档输出
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+ FileOutputStream out = new FileOutputStream(new File(fileName));
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+ workbook.write(out);
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+ out.close();
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+ System.out.println(fileName + "存储完毕");
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+ } catch (IOException e) {
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+ e.printStackTrace();
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+ }
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+ }
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+
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+ private static List<Knowlege> getData(String accessToken,String property) {
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+ List<Knowlege> list = new ArrayList<>();
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+ try {
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+ QizhenAssistant qizhenAssistant = new QizhenAssistant();
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+ BaidubceUtil baidubceUtil = new BaidubceUtil();
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+
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+ String diseaseStr = "风湿性心脏病" +
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+ ",原发性高血压" +
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+ ",急性心肌梗死" +
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+ ",急性冠脉综合征" +
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+ ",冠状动脉粥样硬化性心脏病" +
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+ ",心力衰竭" +
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+ ",心源性休克" +
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+ ",酒精中毒" +
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+ ",咽炎" +
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+ ",急性扁桃体炎" +
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+ ",变应性鼻炎" +
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+ ",慢性鼻窦炎" +
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+ ",鼻出血" +
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+ ",急性牙髓炎" +
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+ ",牙周病" +
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+ ",溃疡性口炎" +
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+ ",反流性食管炎" +
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+ ",胃溃疡" +
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+ ",慢性萎缩性胃炎" +
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+ ",功能性消化不良" +
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+ ",急性阑尾炎" +
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+ ",克罗恩病" +
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+ ",肠梗阻" +
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+ ",肝硬化" +
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+ ",急性胰腺炎" +
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+ ",过敏性皮炎" +
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+ ",湿疹" +
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+ ",银屑病" +
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+ ",带状疱疹" +
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+ ",类风湿性关节炎" +
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+ ",系统性红斑狼疮" +
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+ ",慢性肾炎" +
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+ ",肾病综合征" +
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+ ",慢性肾衰竭" +
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+ ",肾结石" +
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+ ",输尿管结石" +
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+ ",膀胱炎" +
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+ ",前列腺增生" +
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+ ",子宫内膜异位症" +
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+ ",卵巢囊肿" +
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+ ",痛经" +
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+ ",女性更年期综合征" +
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+ ",异位妊娠" +
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+ ",妊娠剧吐" +
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+ ",鼻咽恶性肿瘤" +
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+ ",肝恶性肿瘤" +
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+ ",乳房恶性肿瘤" +
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+ ",宫颈恶性肿瘤" +
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+ ",多发性骨髓瘤" +
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+ ",急性白血病" +
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+ ",血管瘤" +
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+ ",子宫平滑肌瘤" +
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+ ",新生儿黄疸" +
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+ ",新生儿腹泻" +
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+ ",缺铁性贫血" +
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+ ",地中海贫血" +
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+ ",血友病" +
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+ ",甲状腺功能减退症" +
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+ ",甲状腺功能亢进症" +
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+ ",桥本甲状腺炎" +
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+ ",2型糖尿病" +
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+ ",糖尿病" +
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+ ",甲状旁腺功能减退症" +
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+ ",卵巢早衰" +
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+ ",坏血病" +
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+ ",高脂血症" +
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+ ",高尿酸血症" +
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+ ",精神分裂症" +
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+ ",抑郁症" +
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+ ",化脓性脑膜炎" +
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+ ",帕金森病" +
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+ ",癫痫" +
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+ ",偏头痛" +
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+ ",脑梗死" +
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+ ",脑卒中" +
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+ ",阻塞性睡眠呼吸暂停综合征" +
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+ ",肺栓塞" +
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+ ",慢性肺源性心脏病" +
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+ ",急性上呼吸道感染" +
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+ ",病毒性肺炎" +
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+ ",社区获得性肺炎" +
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+ ",支气管肺炎" +
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+ ",肺炎" +
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+ ",支气管哮喘" +
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+ ",呼吸衰竭" +
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+ ",肺部感染" +
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+ ",急性泪腺炎" +
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+ ",急性泪囊炎" +
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+ ",巩膜炎" +
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+ ",角膜炎" +
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+ ",中耳炎" +
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+ ",风湿性关节炎" +
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+ ",颈椎病" +
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+ ",颈肩综合征" +
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+ ",坐骨神经痛" +
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+ ",肩周炎" +
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+ ",骨质疏松" +
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+ ",锁骨骨折" +
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+ ",肱骨骨折" +
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+ ",肩关节脱位";
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+
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+
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+ diseaseStr = "急性心肌梗死" +
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+ ",急性冠脉综合征";
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+
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+ String[] diseases = diseaseStr.split(",");
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+ for (int i=0;i<diseases.length;i++) {
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+ try {
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+ String disease = diseases[i];
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+ disease = disease.trim();
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+ String[] split = property.split("\t");
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+ if(split.length<2){
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+ continue;
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+ }
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+ String quetionParty = split[1];
|
|
|
+ String relation = split[0];
|
|
|
+ String question = "#角色设定\n" +
|
|
|
+ "你是一个医生，你的任务是回答医学相关的问题。\n" +
|
|
|
+ "\n" +
|
|
|
+ "#要求\n" +
|
|
|
+ "1、只根据知识库里的知识回答，不要推理，不要发散！\n" +
|
|
|
+ "2、知识库里没有找到相应的知识，则返回\"未找到相关知识\"\n" +
|
|
|
+ "\n" +
|
|
|
+ "请回答："+disease + quetionParty + "？";
|
|
|
+ Map<String, String> result = qizhenAssistant.getChatResponse(question, QizhenAssistant.getConversationId());
|
|
|
+ String answer = result.get("answer");
|
|
|
+ String references = result.get("references");
|
|
|
+ String defaultReferences = result.get("defaultReferences");
|
|
|
+ String chatResponse = "";
|
|
|
+ if (!("failed".equals(answer) || answer.contains(QizhenAssistant.noAnswer))) {
|
|
|
+ String format = "你是专门处理医学领域文本的关系抽取专家。你将在指定的文本中抽取其中“"+disease+"的"+relation+"”。\n" +
|
|
|
+ "\n" +
|
|
|
+ "#要求\n" +
|
|
|
+ "1、抽取的结果将以JSON数组的形式呈现。每个抽取的“"+relation+"”高度简洁、高度概括，不要要描述性的文字，文字尽量保持在12个字符以内！\n" +
|
|
|
+ "\n" +
|
|
|
+ "#示例\n" +
|
|
|
+ "以抽取主要症状为例\n" +
|
|
|
+ "文本：\n" +
|
|
|
+ "臭汗症的主要症状有全身或局部多汗且有臭味^[1][3][4]^。\n" +
|
|
|
+ "\n" +
|
|
|
+ "局部性臭汗症多发于大汗腺所在部位，如腋窝、腹股沟、足部、肛周、外阴、脐部及女性乳房下等处，以足部、腋部臭汗症最为多见。腋窝臭汗症俗称狐臭，是一种特殊的刺鼻臭味。足部臭汗症常与足部多汗伴发，有刺鼻的臭味^[1][4]^。\n" +
|
|
|
+ "\n" +
|
|
|
+ "全身性臭汗症为一种与种族有关的生理现象，也可见于卫生习惯不良者，服食某些食物（如葱、蒜、芥末）或某些药物（如麝香）后，在个别人中可产生臭汗^[4]^。\n" +
|
|
|
+ "\n" +
|
|
|
+ "输出：[\"全身或局部多汗且有臭味\",\"局部性臭汗症\",\"腋窝臭汗症\",\"足部臭汗症常\",\"全身性臭汗症\"]\n" +
|
|
|
+ "\n" +
|
|
|
+ "2、没有可抽取的“"+relation+"”，则返回空json数组。\n" +
|
|
|
+ "\n" +
|
|
|
+ "本次抽取的文本如下：\n\n";
|
|
|
+
|
|
|
+ String zhiling = format+ answer;
|
|
|
+ System.out.println(zhiling);
|
|
|
+ chatResponse = baidubceUtil.getChatResponse(zhiling, accessToken);
|
|
|
+ chatResponse = filte(chatResponse);
|
|
|
+ JSONArray jsonResult = new JSONArray();
|
|
|
+ if(!StringUtils.isBlank(chatResponse)){
|
|
|
+ try{
|
|
|
+ JSONArray jsonArray = JSONArray.parseArray(chatResponse);
|
|
|
+ JSONArray referenceJA = JSONArray.parseArray(references);
|
|
|
+ for(int t=0;t<jsonArray.size();t++){
|
|
|
+ String name = jsonArray.getString(t);
|
|
|
+ JSONObject temp = new JSONObject();
|
|
|
+ temp.put("name", name);
|
|
|
+ JSONArray tempReferenceJA = new JSONArray();
|
|
|
+ for(int r=0;r<referenceJA.size();r++){
|
|
|
+ JSONObject referenceJO = referenceJA.getJSONObject(r);
|
|
|
+ String content = referenceJO.getString("content");
|
|
|
+ if(content.contains(name)){
|
|
|
+ //JSONObject clone = referenceJO.clone();
|
|
|
+ tempReferenceJA.add(referenceJO.getString("title"));
|
|
|
+ }
|
|
|
+ }
|
|
|
+ temp.put("reference", tempReferenceJA);
|
|
|
+ if(tempReferenceJA.size()<1){
|
|
|
+ temp.put("defaultReferences", defaultReferences);
|
|
|
+ }
|
|
|
+ jsonResult.add(temp);
|
|
|
+ }
|
|
|
+ }catch (Exception e){
|
|
|
+ System.out.println("######"+chatResponse);
|
|
|
+ e.printStackTrace();
|
|
|
+ continue;
|
|
|
+ }
|
|
|
+ }
|
|
|
+ addNode(disease, relation, chatResponse,jsonResult.toJSONString(), answer, question, result, list);
|
|
|
+ }else {
|
|
|
+ addNode(disease, relation, "","", answer, question, result, list);
|
|
|
+ }
|
|
|
+ }catch (Exception e){
|
|
|
+ System.out.println("抽取三元组失败！");
|
|
|
+ e.printStackTrace();
|
|
|
+ }
|
|
|
+ }
|
|
|
+ return list;
|
|
|
+ } catch (Exception e) {
|
|
|
+ System.out.println("未知错误！");
|
|
|
+ e.printStackTrace();
|
|
|
+ }finally {
|
|
|
+ return list;
|
|
|
+ }
|
|
|
+ }
|
|
|
+
|
|
|
+ private static void addNode(String disease, String property, String chatResponse,String refences, String answer, String question, Map<String, String> result, List<Knowlege> list) {
|
|
|
+ Knowlege knowlege = new Knowlege();
|
|
|
+ knowlege.setEntity(disease);
|
|
|
+ knowlege.setProperty(property);
|
|
|
+ knowlege.setValue(chatResponse);
|
|
|
+ knowlege.setAnswer(answer);
|
|
|
+ knowlege.setQuestion(question);
|
|
|
+ knowlege.setChunk(result.get("references"));
|
|
|
+ knowlege.setRefenrece(refences);
|
|
|
+ list.add(knowlege);
|
|
|
+ }
|
|
|
+
|
|
|
+ private static String filte(String chatResponse) {
|
|
|
+ if (chatResponse.startsWith("```json")) {
|
|
|
+ chatResponse = chatResponse.substring(7);
|
|
|
+ }
|
|
|
+ if (chatResponse.endsWith("```")) {
|
|
|
+ chatResponse = chatResponse.substring(0, chatResponse.length() - 3);
|
|
|
+ }
|
|
|
+ return chatResponse;
|
|
|
+ }
|
|
|
+}
|
|
|
+
|
