self-constructing_graph/executor/job_script/standard_kb_build.py

import os,sys
import logging
import json
current_path = os.getcwd()
sys.path.append(current_path)
from agent.db.database import SessionLocal
from agent.libs.graph import GraphBusiness

graphBiz = GraphBusiness(db=SessionLocal())
hi_index = 1
low_index = 1
def get_hi_lo_id():
    global hi_index, low_index
    if low_index < 10000:
        low_index += 1
        return hi_index * 10000 + low_index
    else:
        hi_index += 1
        low_index = 1
        return hi_index * 10000 + low_index
def load_json_from_file(filename: str):
    """检查JSON文件格式是否正确"""
    try:
        with open(filename, 'r', encoding='utf-8') as f:
            content = f.read()
            buffer = []
            json_started = False
            for line in content.split("\n"):
                if line.strip()=="":
                    continue
                if line.startswith("```json"):                   
                    buffer = []
                    json_started = True
                    continue
                if line.startswith("```"):
                    if json_started:
                        return json.loads("\n".join(buffer))
                    json_started = False
                buffer.append(line)

        return None
    except json.JSONDecodeError as e:
        logger.info(f"JSON格式错误: {e}")
        return None

def parse_json(data):
    if 'entities' in data:
        entities = data['entities']
        for entity in entities:
            if len(entity) == 2:
                entity.append("")
                
def import_entities(graph_id, entities_list, relations_list):
    from agent.libs.user_data_relation import UserDataRelationBusiness
    from agent.libs.user import UserBusiness
    from agent.libs.agent import AgentBusiness

    agent_biz = AgentBusiness(db=SessionLocal())

    # 获取job信息
    job = agent_biz.get_job(graph_id)
    if not job:
        logger.error(f"Job not found with id: {graph_id}")
        return entities

    # 从job_creator中提取user_id
    user_id = int(job.job_creator.split('/')[1])

    # 获取用户角色
    user_biz = UserBusiness(db=SessionLocal())
    user = user_biz.get_user(user_id)
    if not user or not user.roles:
        logger.error(f"User {user_id} has no roles assigned")
        return entities
    role_id = user.roles[0].id
    user_name = user.name
    role_name = user.roles[0].name
    
    # 创建用户数据关系业务对象
    relation_biz = UserDataRelationBusiness(db=SessionLocal())

    # 创建子图谱数据关联
    relation_biz.create_relation(user_id, 'sub_graph', graph_id, role_id)
    
    for text, ent in entities_list.items():
        id = ent['id']
        name = ent['name']
        type = ent['type']
        full_name = name
        if len(name) > 64:
            name = name[:64]
        logger.info(f"create node: {ent}")
        node = graphBiz.create_node(graph_id=graph_id, name=name, category=type[0], props={'types':",".join(type),'full_name':full_name})
        if node:
            ent["db_id"] = node.id
            # 创建节点数据关联
            relation_biz.create_relation(user_id, 'DbKgNode', node.id, role_id, user_name, role_name)
            
    for text, relations in relations_list.items():
        source_name = relations['source_name']
        source_type = relations['source_type']
        target_name = relations['target_name']
        target_type = relations['target_type']
        relation_type = relations['type']
        source_db_id = entities_list[source_name]['db_id']
        target_db_id = entities_list[target_name]['db_id']
        edge = graphBiz.create_edge(graph_id=graph_id, 
                             src_id=source_db_id, 
                             dest_id=target_db_id, 
                             name=relation_type, 
                             category=relation_type, 
                             props={
                                 "src_type":source_type,
                                 "dest_type":target_type,
                             })
        logger.info(f"create edge: {source_db_id}->{target_db_id}")
        # 创建边数据关联
        if edge:
            relation_biz.create_relation(user_id, 'DbKgEdge', edge.id, role_id, user_name, role_name)



    # 构建树状结构并存储到数据库
    disease_nodes = [ent for ent in entities_list.values() if '疾病' in ent.get('type', [])]
    if disease_nodes:
        # 按照名称字母排序
        disease_nodes.sort(key=lambda x: x['name'])
        
        # 构建树状结构
        tree_structure = {"name": "疾病", "sNode": []}
        current_letter = None
        letter_group = None
        
        for node in disease_nodes:
            first_letter = node['name'][0].upper()
            if first_letter != current_letter:
                current_letter = first_letter
                letter_group = {"name": current_letter, "sNode": []}
                tree_structure["sNode"].append(letter_group)
            letter_group["sNode"].append({"name": node['name'], "sNode": []})
        
        # 存储到数据库
        from agent.models.db.tree_structure import TreeStructure
        db = SessionLocal()
        try:
            tree_record = TreeStructure(
                user_id=user_id,
                graph_id=graph_id,
                content=json.dumps(tree_structure, ensure_ascii=False)
            )
            db.add(tree_record)
            db.commit()
        except Exception as e:
            db.rollback()
            logger.error(f"Failed to save tree structure: {e}")
        finally:
            db.close()
    
    # 构建树状结构并存储到数据库
    disease_nodes = [ent for ent in entities_list.values() if '疾病' in ent.get('type', [])]
    if disease_nodes:
        # 按照名称字母排序
        disease_nodes.sort(key=lambda x: x['name'])
        
        # 构建树状结构
        tree_structure = {"name": "症状", "sNode": []}
        current_letter = None
        letter_group = None
        
        for node in disease_nodes:
            first_letter = node['name'][0].upper()
            if first_letter != current_letter:
                current_letter = first_letter
                letter_group = {"name": current_letter, "sNode": []}
                tree_structure["sNode"].append(letter_group)
            letter_group["sNode"].append({"name": node['name'], "sNode": []})
        
        # 存储到数据库
        from agent.models.db.tree_structure import TreeStructure
        db = SessionLocal()
        try:
            tree_record = TreeStructure(
                user_id=user_id,
                graph_id=graph_id,
                content=json.dumps(tree_structure, ensure_ascii=False)
            )
            db.add(tree_record)
            db.commit()
        except Exception as e:
            db.rollback()
            logger.error(f"Failed to save tree structure: {e}")
        finally:
            db.close()
    
    return entities
if __name__ == "__main__":
    if len(sys.argv) != 2:
        print("Usage: python standard_kb_cbuild.py <path_of_job> <graph_id>")
        sys.exit(-1)
    job_path = sys.argv[1]
    if not os.path.exists(job_path):
        print(f"job path not exists: {job_path}")
        sys.exit(-1)
    kb_path = os.path.join(job_path,"kb_extract")
    if not os.path.exists(kb_path):
        print(f"kb path not exists: {kb_path}")
        sys.exit(-1)
    kb_build_path = os.path.join(job_path,"kb_build")
    job_id = int(job_path.split("/")[-1])
    os.makedirs(kb_build_path,exist_ok=True)
    
    log_path = os.path.join(job_path,"logs")
    print(f"log path: {log_path}")
    handler = logging.FileHandler(f"{log_path}/graph_build.log", mode='a',encoding="utf-8")
    handler.setLevel(logging.INFO)
    formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s')
    handler.setFormatter(formatter)
    logging.getLogger().addHandler(handler)    
    logger = logging.getLogger(__name__)  
    entities_list = {}
    relations_list = {}

    for root,dirs,files in os.walk(kb_path):
        for file in files:
            if file.endswith(".txt"):
                logger.info(f"Processing {file}")
                data = load_json_from_file(filename=os.path.join(root,file))
                if data is None:
                    continue
                if 'entities' in data:
                    entities = data['entities']
                    for entity in entities:
                        text = entity['text']
                        type = entity['type']
                        position = entity['position']
                        if text in entities_list:
                            ent = entities_list[text]
                            if type in ent['type']:
                                continue
                            ent['type'].append(type)
                        else:
                            ent = {"id": get_hi_lo_id(), "name":text,"type":[type]}
                            entities_list[text] = ent
                else:
                    logger.info(f"entities not found in {file}")
                if "relations" in data:
                    relations = data['relations']
                    for relation in relations:
                        source_idx = relation['source']
                        target_idx = relation['target']
                        type = relation['type']
                        if source_idx >= len(data['entities']) or target_idx >= len(data['entities']):
                            logger.info(f"source/target of relation {relation} not found")
                            continue
                        source_ent = data['entities'][source_idx]
                        target_ent = data['entities'][target_idx]
                        source_text = source_ent['text']
                        source_type = source_ent['type']
                        target_text = target_ent['text']
                        target_type = target_ent['type']
                        
                        if source_text in entities_list:
                            source_ent = entities_list[source_text]
                        else:
                            source_ent = None
                        if target_text in entities_list:
                            target_ent = entities_list[target_text]
                        else:
                            target_ent = None
                            
                        if source_ent and target_ent:
                            source_id = source_ent['id']
                            target_id = target_ent['id']
                            relation_key = f"{source_id}/{source_type}-{type}->{target_id}/{target_type}"
                            if relation_key in relations_list:
                                continue
                            relations_list[relation_key] = {"source_id":source_id, 
                                                            "source_name":source_text, 
                                                            "source_type":source_type, 
                                                            "target_id":target_id, 
                                                            "target_name":target_text,
                                                            "target_type":target_type, 
                                                            "type":type}
                        else:
                            logger.info(f"relation {relation_key} not found")
                else:
                    logger.info(f"relations not found in {file}")

                print(f"Done {file}")
    with open(os.path.join(kb_build_path,"entities.json"), "w", encoding="utf-8") as f:
        f.write(json.dumps(list(entities_list.values()), ensure_ascii=False,indent=4))
    with open(os.path.join(kb_build_path,"relations.json"), "w", encoding="utf-8") as f:
        f.write(json.dumps(list(relations_list.values()), ensure_ascii=False,indent=4))
    import_entities(job_id, entities_list, relations_list)
    print("Done")